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Data Visualisation in UCSC Genome Browser

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Interactive Online Companionship (IOC)
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STARTbio

ARTbio/startbio

Home
Interactive Online Companionship (IOC)
1Omin2
Galaxy Trainings
Galaxy Trainings
- Analyse des Génomes (2024)
- Run your Galaxy server
- Run a Galaxy workflow for somatic mutation detection in cancers
- Search for chomosome translocations
  Search for chomosome translocations
  - Introduction
  - Sequencing Protocol
  - Lumpy approach
  - Trainee connection
  - Prepare the input data history
  - Align reads to the human genome
  - lumpy analysis
  - Reformat VCF files for visualization in the UCSC genome browser
  - Compute the genome read coverage
  - Data Visualisation in UCSC Genome Browser Data Visualisation in UCSC Genome Browser
    Table of contents
    
    Visualisation of vcf files and genome read coverage for patients A & B
  - Generate workflow from an history
  - Run the Lumpy workflow
- Reference-based RNAseq analysis
- Viruses Metagenomics
- Download TARGET-AML Data in Galaxy
Code Snippets
Links

Table of contents

Visualisation of vcf files and genome read coverage for patients A & B

Data Visualisation in UCSC Genome Browser

Visualisation of vcf files and genome read coverage for patients A & B¶

Compute the genome read coverage

Generate workflow from an history

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