Introduction

Mouse Genetics - Training session - Finding translocation breakpoints with lumpy-sv

January 30^th

In this training session, we are going to analyse 2 datasets from two patients using Galaxy in order to find translocations between BCR (chr22) and ABL1 (chr9).

We will visualize the coverage of these two genes by the datasets sequencing reads.

We will use the tool lumpy to find putative translocations sites in patients genomes and we will visualize the position of these sites in the genome.