Prerequisites¶
This tutorial aims to help identify cell populations from single cell transcriptomics data.
It is composed of R code that you can execute in a R console. You can also use any R graphical environment like Rstudio. You can retrieve the associated Rscript or R Markdown file (An executable document that combine text and code to produce formatted report) here.
Installation of R and RStudio
Here is some documentation to help you install R and Rstudio if needed :
- https://larmarange.github.io/analyse-R/installation-de-R-et-RStudio.html
- https://bookdown.org/introrbook/intro2r/installing-r-and-rstudio.html
However you are provided with an Rstudio-server account to follow the IOC !
Technical prerequisites¶
The following points are required to be able to perform the practical parts of this tutorial correctly :
- Basic knowledge in R because there is no focus on R code
- How to manipulate R objets (vectors, dataframe, lists)
- Create basics functions
- How to use
lapply
andmapply
- R version >= 4 installed
- You can see all mandatory packages and their version at
references with the
sessionInfo
- You can see all mandatory packages and their version at
references with the