PLAN

In this training, you are going to

1. Deploy your own Galaxy server in a Google Virtual machine

   This will be done outside of class hours as it takes computer time, during which you cannot do analyses.

2. Review the operations to stop, start, restart your Galaxy server in your Google virtual machine

3. Prepare your Galaxy server for the next day analyses

   Upload references data and sequencing datasets, index genome references for fast read alignments, etc.

4. Compare the procedures for performing a simple file formatting task, either using command lines in the linux environment or using Galaxy

   This will provide also the opportunity to take the control of your Galaxy server deployed in 1.

By the end of the training session, you should have prepared your Galaxy analysis environment and get it ready to perform subsequent analyses of small RNAseq and RNAseq datasets as described here