Inspection of the mapping results

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UCSC genome browser

click the ucsc main link as indicated by the orange arrow

Zoom to chr4:540,000-560,000 (Chromosome 4 between 540 kb to 560 kb)

IGV

To use IGV with galaxy you need to have this tool on your computer. (If not you can download IGV from their main site.)

1. Open locally IGV
2. click the IGV local ling as indicated by the red arrow.

Zoom to chr4:540,000-560,000 (Chromosome 4 between 540 kb to 560 kb)

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